As part of my Bachelor's degree in Bioinformatics I completed two 6 month projects at Bio-Prodict in Nijmegen, a highly experienced bioinformatics company specializing in protein predictions.
In 2015 I started a Research Minor at Bio-Prodict. This project involved an intermediate level data science project concerning the development of a pathogenicity predictor, trained and verified on a dataset concerning a specific genetic disorder.
Data science with pandas for analysis
Source control and continuous integration
Working with and administrating Linux
After my research minor Bio-Prodict asked me to continue my data science work as part of my graduation internship in 2016. We decided to start work on more advanced, neural network-based solutions to learning about protein properties.
Convolutional and Dense neural networks with Keras for protein analysis
Recurrent Neural Networks with Keras for literature analysis
Integration with Tensorboard and FGLab dashboards
The video below was produced with PyMol and the GreenSock Animation Platform for HTML/CSS/JS animations.
During both periods I was in charge of rewriting the code for the 3DM plugin for YASARA and PyMol. This plugin provides integration for these molecular viewers with Bio-Prodict's 3DM platform.
Plugin platforms for molecular visualization
Advanced Python code developed to PEP8 and PyLint standards
Jenkins for code quality monitoring and deployment pipelines